| alloc.c | Memory allocation routines |
| alloc.h | Memory allocation routines (header file) |
| avs_output.cxx | Output routines for field data in AVS/Express format |
| avs_output.h | Output routines for field data in AVS/Express format (header file) |
| avs_output_p.cxx | Output routines for particle data in AVS/Express format |
| avs_output_p.h | Output routines for particle data in AVS/Express format (header file) |
| f_particle.cxx | Compute Hydrodynamic force on particle |
| f_particle.h | Compute Hydrodynamic force on particle (header file) |
| fft_wrapper.cxx | FFT wrapper routines for reciprocal space calculations |
| fft_wrapper.h | FFT wrapper routines for reciprocal space calculations (header file) |
| fftsg.c | Ooura's 1D FFT routines |
| fftsg3d.c | Ooura's 3D FFT routines |
| fluct.cxx | Routines to compute random thermal fluctuation forces |
| fluct.h | Routines to compute random thermal fluctuation forces (header file) |
| fluid_solver.cxx | Solver for Navier-Stokes equations |
| fluid_solver.h | Solver for Navier-Stokes equations (header file) |
| init_fluid.cxx | Initialize fluid velocity fields |
| init_fluid.h | Initialize fluid velocity fields (header file) |
| init_particle.cxx | Initialize particle properties |
| init_particle.h | Initialize particle properties (header file) |
| input.cxx | Read udf input file to start simulation |
| input.h | Read udf input file to start simulation (header file) |
| interaction.cxx | Compute inter-particle interactions |
| interaction.h | Compute inter-particle interactions (header file) |
| lad3.h | Basic Matrix / Vector Euclidean 3D routines (not very optimized) |
| macro.h | Global parameters and macro function definitions |
| make_phi.cxx | Routines to compute smooth profile and grid particle properties |
| make_phi.h | Routines to compute smooth profile and grid particle properties (header file) |
| Matrix_Inverse.h | |
| md_force.cxx | Routines to compute MD forces on particles |
| md_force.h | Routines to compute MD forces on particles (header file) |
| mt19937ar.c | Randon number generator - You get what you deserve if you modify this file ! |
| operate_electrolyte.cxx | Routines to compute the charge distributions and forces |
| operate_electrolyte.h | Routines to compute the charge distributions and forces (header file) |
| operate_omega.cxx | High-level routines to handle basic operations on velocity field |
| operate_omega.h | High-level routines to handle basic operations on velocity field (header file) |
| operate_surface.cxx | Routines to control the slip velocity at particle fluid boundaries |
| operate_surface.h | Routines to control the slip velocity at particle fluid boundaries (header file) |
| parameter_define.h | Define global system parameters for FFT routines |
| particle_solver.cxx | Solver routines for particle position and velocity |
| particle_solver.h | Solver routines for particle position and velocity (header file) |
| profile.cxx | Smooth particle profile routines |
| profile.h | Smooth particle profile routines (header file) |
| quaternion.h | Implements simple quaternion algebra |
| resume.cxx | Routines to read/write restart file |
| resume.h | Routines to read/write restart file (header file) |
| rigid.h | |
| rigid_body.cxx | Auxiliary routines to solve equations of motion for rigid bodies |
| rigid_body.h | Auxiliary routines to solve equations of motion for rigid bodies (header file) |
| solute_rhs.cxx | Routines to compute the terms appearing in the right hand side of the solute advection diffusion equation |
| solute_rhs.h | Routines to compute the terms appearing in the right hand side of the solute advection diffusion equation (header file) |
| sp_3d_ns.cxx | Main program file |
| sp_3d_ns.h | Main program file (header) |
| variable.h | Defines the global structs (CTime, Particle, Index_range) |
| Tools/udf2xyz.cxx | |
| Tools/helixudf_generator/ | A tool to generate initial configuration of helicesfor "input.udf" |
