* Installation of KAPSEL binary [#h03d9749] ** STEP 1: Download "KAPSEL" [#ja8071fa] - Visit [[KAPSEL-BBS:http://www.cheme.kyoto-u.ac.jp/1koza/kapsel/phpBB3/]] and Login. Registration is required if you haven't yet complete it. - Follow "DOWNLOAD" -> "KAPSEL-2" -> "KAPSEL-2 binary executables" to download appropriate binary executables for your system. -- "kapsel2_linux.tar.gz" (Linux on x86-64 machine) -- "kapsel2_win.zip" (32-bit Windows Vista or XP) . ** STEP 2: Test run [#l8a9ee25] - for Linux > tar zxvf kapsel2_linux.tar.gz > ./kapsel -Icolloid_1.udf -Ooutput.udf -Ddefine.udf -Rrestart.udf - for Windows -- unzip "kapsel2_win.zip" -- open command prompt > kapsel -Icolloid_1.udf -Ooutput.udf -Ddefine.udf -Rrestart.udf - If you see the output as shown below, KAPSEL has been successfully installed. #using colloid_1.udf as input #using output.udf as output #using define.udf as definition #using restart.udf as restart # # Electrolyte eq. selected. # ... - If the program does not properly run or abnormally terminated, build KAPSEL from the source codes. ([[see this>Install]]) ** STEP 3: Download and install "Gourmet" [#hdf41283] - "Gourmet" is a graphic platform developed by OCTA project. The complete OCTA package is not necessary, but Gourmet is needed to use KAPSEL. - Visit [[OCTA-BBS:http://octa001.muse.aist.go.jp/phpBB3/]] and Login. Registration is required if you haven't yet complete it. - For Linux -- Follow "DOWNLOAD" -> "OCTA2007" -> "GOURMET 4.1.0 (on OCTA2007) for Windows and Linux". -- download "gourmet_2007_linux.tar.gz" > tar zxvf gourmet_2007_linux.tar.gz > su > mkdir /usr/local/OCTA2007 > mv GOURMET_2007 /usr/local/OCTA2007/. - For Windows -- Follow "DOWNLOAD" -> "OCTA2007" -> "Platform GOURMET2007 in OCTA2007 (for Windows)". -- download "GOURMET2007.exe" and click it. ** STEP 4: Visualize the result [#de6c8fcf] - The above test run takes about an hour. Save &ref(output.udf); if you cannot wait till it. - Gnuplot on Gourmet -- Save &ref(plot.py);. -- Start "Gourmet" -- "File" -> "Open" -> Open "output.udf". -- Move down to "Python" panel, and click "Load" -- Open "plot.py", and click "Run" -- Move up "View" box, and check "Table" -- Move down-left and select "Graph Sheet[]". -- Move down to "Plot" panel, and type "plot "plot.dat" using 2:6 title 'vx0' with lines" in the command box. -- Click "Plot", and you will see the time evoluation of Vx. - Animation on Gourmet -- Save &ref(particleshow.py); and &ref(show_field.py);. -- Start "Gourmet" -- "File" -> "Open" -> Open "output.udf". -- Move down to "Python" panel, and click "Load" -- Open "particleshow.py" (particle only) or "show_field.py" (particle with flow field, very slow!!). -- Click "Run" -- A new window will open, and click the playback button ">" there. - Animation on AVS/Express (optional) -- One can enjoy much advanced data-visualization with AVS/Express. A sample visualization network &ref(avs_charge.v); is attached.